IEEE - Institute of Electrical and Electronics Engineers, Inc. - A Flexible Stem-Based Local Search Algorithm for Predicting RNA Secondary Structures Including Pseudoknots

7th IEEE International Conference on Bioinformatics and Bioengineering

Author(s): Xiang Chen ; Si-Min He ; Dong-Bo Bu ; Run-Sheng Chen ; Wen Gao
Publisher: IEEE - Institute of Electrical and Electronics Engineers, Inc.
Publication Date: 1 October 2007
Conference Location: Boston, MA, USA
Conference Date: 14 October 2007
Page(s): 411 - 417
ISBN (Paper): 978-1-4244-1509-0
DOI: 10.1109/BIBE.2007.4375595
Regular:

We demonstrate a new algorithm named FlexStem to predict RNA secondary structures with pseudoknots. Our approach is based on the free energy minimization criterion, and utilizes a sophisticated... View More

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